| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3408 | 56923 | G | A | 15 | 98.77 | CDS | Transition | 0/1 | Ankyrin repeat protein SKIP35 (SKP1-interacting partner 35) |
| Scaffold_3408 | 57022 | T | C | 19 | 63.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3420 | 57079 | G | A | 13 | 178.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3431 | 18507 | A | G | 248 | 71.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3431 | 49480 | C | T | 249 | 6899.77 | noncoding | Transition | 0/1 | 30S ribosomal protein S14, chloroplastic |
| Scaffold_3432 | 18912 | C | T | 245 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 7774 | G | A | 60 | 108.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 7776 | G | A | 67 | 150.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 7797 | G | A | 127 | 1969.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 8963 | G | A | 239 | 783.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 9018 | G | A | 73 | 1972.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 9039 | G | A | 55 | 1024.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 9048 | G | A | 47 | 51.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 9078 | G | A | 82 | 2121.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 9138 | G | A | 250 | 7373.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3436 | 52069 | A | G | 247 | 705.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3440 | 13649 | C | T | 155 | 3128.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_3440 | 13693 | C | T | 250 | 6838.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_3440 | 13758 | T | C | 36 | 85.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_3442 | 12120 | T | C | 250 | 9388.77 | noncoding | Transition | 1/1 | Unannotated |