| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3465 | 34213 | C | T | 26 | 475.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34221 | C | T | 21 | 264.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34251 | C | T | 15 | 191.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34255 | C | T | 15 | 104.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34394 | C | T | 128 | 447.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34420 | C | T | 250 | 7623.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34539 | C | T | 250 | 5870.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34700 | C | T | 239 | 3998.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 34718 | C | T | 217 | 221.77 | noncoding | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 2 (EC 7.1.1.2) (NADH dehydrogenase subunit 2) |
| Scaffold_3465 | 50548 | G | A | 216 | 2926.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3465 | 51209 | T | C | 205 | 65.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3465 | 51468 | G | A | 161 | 588.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3469 | 46144 | G | A | 32 | 35.77 | noncoding | Transition | 0/1 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |
| Scaffold_3470 | 43595 | C | T | 136 | 2681.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3470 | 43681 | C | T | 77 | 663.77 | noncoding | Transition | 0/1 | Putative ATP synthase protein YMF19 (EC 7.1.2.2) (Mitochondrial protein YMF19) |
| Scaffold_3470 | 43709 | C | T | 30 | 936.53 | noncoding | Transition | 1/1 | Putative ATP synthase protein YMF19 (EC 7.1.2.2) (Mitochondrial protein YMF19) |
| Scaffold_3470 | 43727 | C | T | 64 | 1831.77 | noncoding | Transition | 0/1 | Putative ATP synthase protein YMF19 (EC 7.1.2.2) (Mitochondrial protein YMF19) |
| Scaffold_3470 | 43728 | C | T | 67 | 1988.77 | noncoding | Transition | 0/1 | Putative ATP synthase protein YMF19 (EC 7.1.2.2) (Mitochondrial protein YMF19) |
| Scaffold_3470 | 43830 | C | T | 250 | 60.77 | noncoding | Transition | 0/1 | Putative ATP synthase protein YMF19 (EC 7.1.2.2) (Mitochondrial protein YMF19) |
| Scaffold_3470 | 43909 | C | T | 250 | 46.77 | noncoding | Transition | 0/1 | Putative ATP synthase protein YMF19 (EC 7.1.2.2) (Mitochondrial protein YMF19) |