| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3529 | 15464 | C | T | 22 | 73.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15521 | C | T | 23 | 572.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15579 | A | G | 12 | 183.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3529 | 15588 | A | G | 12 | 185.77 | exon | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3532 | 49187 | A | G | 47 | 35.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49212 | T | C | 250 | 54.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49216 | A | G | 250 | 247.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49469 | A | G | 250 | 306.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49542 | A | G | 250 | 81.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49682 | G | A | 250 | 430.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49696 | A | G | 250 | 199.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49706 | T | C | 250 | 409.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3532 | 49950 | G | A | 16 | 263.56 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16160 | A | G | 249 | 84.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16168 | T | C | 250 | 32.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16169 | T | C | 250 | 293.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16174 | T | C | 250 | 146.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16175 | T | C | 250 | 1112.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16182 | T | C | 250 | 343.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3533 | 16183 | T | C | 250 | 844.77 | noncoding | Transition | 0/1 | Unannotated |