| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3595 | 52020 | T | C | 250 | 253.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3596 | 7486 | C | T | 174 | 1632.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3596 | 7505 | G | A | 174 | 3600.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3596 | 51633 | T | C | 10 | 268.77 | intron | Transition | 0/1 | Probable 2-oxoglutarate-dependent dioxygenase AOP1.2 (EC 1.14.11.-) |
| Scaffold_3597 | 27865 | A | G | 250 | 136.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3597 | 27916 | G | A | 250 | 3140.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3601 | 15152 | T | C | 32 | 75.77 | exon | Transition | 0/1 | F-box/WD-40 repeat-containing protein At5g21040 |
| Scaffold_3602 | 17583 | A | G | 250 | 299.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3602 | 41685 | C | T | 52 | 1210.77 | intron | Transition | 1/1 | Unannotated |
| Scaffold_3603 | 15996 | T | C | 249 | 607.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3603 | 16005 | T | C | 250 | 139.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3603 | 16016 | T | C | 249 | 404.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3603 | 16017 | A | G | 249 | 222.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3603 | 16083 | A | G | 250 | 92.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3603 | 16092 | A | G | 246 | 152.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 14980 | G | A | 250 | 2062.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15002 | G | A | 250 | 533.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15047 | G | A | 250 | 5899.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15382 | G | A | 250 | 8988.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_3604 | 15481 | G | A | 250 | 8051.77 | exon | Transition | 0/1 | Unannotated |