| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3604 | 15506 | G | A | 250 | 5565.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15580 | G | A | 102 | 2907.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15583 | G | A | 63 | 1393.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15590 | G | A | 31 | 291.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15605 | G | A | 33 | 345.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15637 | G | A | 47 | 279.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 15649 | G | A | 90 | 2245.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 16200 | G | A | 157 | 123.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3604 | 16375 | G | A | 20 | 52.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3605 | 9329 | A | G | 250 | 93.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3605 | 9331 | C | T | 248 | 378.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3605 | 9336 | T | C | 250 | 508.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3605 | 9355 | A | G | 248 | 475.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3609 | 31180 | A | G | 250 | 218.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3611 | 2025 | C | T | 182 | 379.77 | exon | Transition | 0/1 | ATP synthase subunit alpha, chloroplastic (EC 7.1.2.2) (ATP synthase F1 sector subunit alpha) (F-ATPase subunit alpha) |
| Scaffold_3612 | 7622 | T | C | 28 | 189.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3612 | 13864 | T | C | 21 | 31.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3612 | 18293 | G | A | 13 | 159.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3612 | 21544 | G | A | 46 | 1088.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3612 | 21556 | G | A | 21 | 420.77 | exon | Transition | 0/1 | Unannotated |