| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3612 | 72781 | C | T | 137 | 4038.77 | exon | Transition | 1/1 | Unannotated |
| Scaffold_3612 | 72837 | C | T | 17 | 287.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3613 | 43961 | G | A | 15 | 30.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3617 | 2352 | G | A | 15 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3617 | 3518 | G | A | 19 | 57.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3618 | 55982 | C | T | 19 | 578.28 | noncoding | Transition | 1/1 | 30S ribosomal protein S12-B, chloroplastic |
| Scaffold_3619 | 39899 | C | T | 14 | 52.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3619 | 42567 | C | T | 15 | 206.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3619 | 44387 | C | T | 34 | 66.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3620 | 14709 | C | T | 250 | 2858.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_3621 | 53331 | A | G | 24 | 34.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3622 | 5196 | C | T | 14 | 30.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3622 | 5266 | C | T | 23 | 144.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3622 | 5267 | C | T | 23 | 133.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3622 | 5268 | G | A | 22 | 131.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3622 | 5299 | A | G | 16 | 117.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |
| Scaffold_3626 | 59480 | C | T | 15 | 195.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3626 | 59495 | G | A | 15 | 109.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3632 | 9 | T | C | 250 | 410.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3632 | 128 | G | A | 142 | 338.77 | intron | Transition | 0/1 | Unannotated |