| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3674 | 4088 | G | A | 81 | 1333.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3674 | 4197 | G | A | 61 | 1289.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3674 | 4201 | A | G | 64 | 213.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3674 | 4269 | T | C | 26 | 620.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3677 | 55830 | G | A | 12 | 58.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3678 | 13967 | G | A | 34 | 311.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3678 | 14076 | A | G | 25 | 115.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3681 | 19120 | G | A | 17 | 49.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3681 | 20006 | G | A | 24 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3681 | 20010 | G | A | 21 | 143.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3683 | 32545 | G | A | 250 | 1731.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3685 | 7643 | T | C | 250 | 265.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3685 | 48411 | T | C | 14 | 156.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3685 | 48430 | G | A | 15 | 117.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3685 | 48453 | G | A | 18 | 131.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3691 | 51678 | A | G | 204 | 4377.77 | CDS | Transition | 0/1 | Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40) |
| Scaffold_3691 | 51792 | C | T | 154 | 346.77 | CDS | Transition | 0/1 | Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40) |
| Scaffold_3691 | 51822 | C | T | 111 | 34.77 | CDS | Transition | 0/1 | Pyruvate kinase isozyme A, chloroplastic (EC 2.7.1.40) |
| Scaffold_3692 | 48066 | C | T | 16 | 144.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3692 | 48078 | C | T | 17 | 30.77 | noncoding | Transition | 0/1 | Unannotated |