| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3708 | 23051 | C | T | 16 | 30.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3708 | 23415 | G | A | 12 | 311.9 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23482 | G | A | 20 | 495.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23539 | G | A | 15 | 392.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23605 | G | A | 42 | 91.77 | intron | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23649 | G | A | 70 | 116.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23662 | T | C | 70 | 135.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23665 | G | A | 68 | 637.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3708 | 23776 | G | A | 30 | 160.77 | CDS | Transition | 0/1 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Includes: Protease (EC 3.4.23.-); Reverse transcriptase (EC 2.7.7.49); Endonuclease] |
| Scaffold_3711 | 45310 | A | G | 209 | 1774.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 45649 | A | G | 74 | 104.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 45951 | C | T | 250 | 540.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 46170 | G | A | 250 | 2271.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 46240 | A | G | 219 | 429.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 46246 | T | C | 212 | 358.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 46288 | C | T | 52 | 861.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3711 | 46289 | T | C | 45 | 679.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3717 | 17110 | C | T | 15 | 396.77 | noncoding | Transition | 0/1 | Ribosomal protein S3, mitochondrial |
| Scaffold_3717 | 17163 | C | T | 174 | 4254.77 | noncoding | Transition | 1/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3717 | 17227 | C | T | 164 | 4590.77 | noncoding | Transition | 1/1 | 60S ribosomal protein L16, mitochondrial |