| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3717 | 17353 | C | T | 250 | 2391.77 | noncoding | Transition | 0/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3717 | 17375 | C | T | 250 | 8895.77 | noncoding | Transition | 1/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3717 | 17471 | T | C | 248 | 156.77 | noncoding | Transition | 0/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3717 | 17592 | C | T | 250 | 1605.77 | noncoding | Transition | 0/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3717 | 17672 | C | T | 250 | 8603.77 | noncoding | Transition | 1/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3717 | 17678 | C | T | 250 | 8749.77 | noncoding | Transition | 1/1 | 60S ribosomal protein L16, mitochondrial |
| Scaffold_3724 | 68769 | A | G | 59 | 242.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3725 | 36600 | A | G | 37 | 56.77 | exon | Transition | 0/1 | Glycosyltransferase family 92 protein RCOM_0530710 (EC 2.4.1.-) |
| Scaffold_3725 | 37018 | A | G | 178 | 52.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3725 | 37027 | A | G | 250 | 162.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3725 | 55510 | T | C | 91 | 222.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3725 | 55529 | C | T | 101 | 97.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3725 | 55531 | C | T | 100 | 100.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3725 | 55532 | C | T | 100 | 1782.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3726 | 21162 | T | C | 250 | 64.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3726 | 21307 | G | A | 250 | 1474.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3726 | 22667 | A | G | 250 | 84.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3726 | 22678 | A | G | 250 | 1748.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3727 | 4422 | C | T | 58 | 236.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2) (NADH-plastoquinone oxidoreductase subunit 2) |
| Scaffold_3728 | 43518 | T | C | 11 | 82.77 | CDS | Transition | 0/1 | Unannotated |