| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3763 | 3724 | T | C | 77 | 1912.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3763 | 37575 | T | C | 23 | 303.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3763 | 37587 | A | G | 28 | 329.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3763 | 37692 | T | C | 12 | 149.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3763 | 38914 | C | T | 25 | 270.77 | CDS | Transition | 0/1 | UDP-rhamnose/UDP-galactose transporter 1 (UDP-Rha/UDP-Gal transporter 1) (UDP-galactose transporter 2) (At-UDP-GalT2) |
| Scaffold_3767 | 50563 | A | G | 247 | 154.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3767 | 50566 | A | G | 249 | 293.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3767 | 50590 | A | G | 249 | 492.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3767 | 50601 | T | C | 248 | 216.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3767 | 50614 | T | C | 250 | 659.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3767 | 50623 | A | G | 250 | 394.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3770 | 57198 | A | G | 12 | 224.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3770 | 57239 | C | T | 32 | 328.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3771 | 12553 | T | C | 10 | 30.77 | CDS | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3771 | 12835 | A | G | 11 | 151.77 | CDS | Transition | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At2g16250 (EC 2.7.11.1) |
| Scaffold_3773 | 2486 | A | G | 25 | 34.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3773 | 3203 | C | T | 23 | 526.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3773 | 3225 | C | T | 17 | 115.77 | intron | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_3773 | 3241 | C | T | 29 | 376.77 | intron | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |
| Scaffold_3773 | 3246 | C | T | 29 | 575.77 | intron | Transition | 0/1 | NADH-ubiquinone oxidoreductase chain 4 (EC 7.1.1.2) (NADH dehydrogenase subunit 4) |