| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3855 | 74241 | G | A | 121 | 512.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3856 | 70145 | T | C | 11 | 58.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3856 | 78685 | G | A | 29 | 63.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3856 | 79497 | G | A | 250 | 5672.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3856 | 80129 | G | A | 221 | 1986.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3856 | 80926 | G | A | 250 | 157.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3858 | 20729 | T | C | 245 | 3751.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3858 | 23784 | A | G | 14 | 258.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3858 | 23833 | C | T | 19 | 316.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3862 | 35351 | T | C | 26 | 397.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35441 | G | A | 22 | 176.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35456 | T | C | 19 | 216.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35989 | G | A | 21 | 43.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 36025 | G | A | 30 | 162.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 36103 | A | G | 20 | 57.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3866 | 60099 | G | A | 248 | 9512.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_3870 | 41426 | T | C | 14 | 33.77 | noncoding | Transition | 0/1 | ATP synthase subunit beta, chloroplastic (EC 7.1.2.2) (ATP synthase F1 sector subunit beta) (F-ATPase subunit beta) (Fragment) |
| Scaffold_3872 | 48156 | A | G | 250 | 43.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3873 | 48074 | G | A | 18 | 134.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3874 | 46951 | G | A | 10 | 30.77 | noncoding | Transition | 0/1 | Unannotated |