| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_42 | 986420 | A | C | 49 | 1050.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1090204 | G | C | 35 | 636.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1091312 | C | A | 33 | 248.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1091328 | T | A | 34 | 250.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1091610 | G | T | 60 | 594.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1382664 | A | C | 25 | 62.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1384943 | T | A | 67 | 144.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_42 | 1449860 | C | A | 19 | 75.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 5336 | T | G | 10 | 67.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 50113 | T | A | 31 | 494.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 50173 | A | C | 44 | 68.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 53345 | A | T | 28 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 65137 | T | G | 14 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 73595 | G | C | 16 | 78.77 | CDS | Transversion | 0/1 | TMV resistance protein N |
| Scaffold_43 | 88555 | A | T | 13 | 52.77 | CDS | Transversion | 0/1 | Nucleosome assembly protein 1;2 (NtNAP1;2) (Nucleosome assembly protein 1-like 2) (NtNAP1_L2) |
| Scaffold_43 | 193542 | C | G | 90 | 690.77 | exon | Transversion | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198783 | G | T | 71 | 703.77 | exon | Transversion | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 473286 | A | T | 12 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 473386 | C | G | 12 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_43 | 592751 | T | A | 69 | 49.77 | exon | Transversion | 0/1 | Unannotated |