| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3978 | 6196 | C | T | 31 | 891.56 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_3980 | 41444 | C | T | 21 | 465.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3980 | 41468 | C | T | 24 | 94.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3980 | 41522 | C | T | 16 | 264.77 | exon | Transition | 0/1 | Unannotated |
| Scaffold_3980 | 51189 | C | T | 13 | 30.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3982 | 26299 | T | C | 250 | 54.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3985 | 4805 | C | T | 37 | 51.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3988 | 8694 | A | G | 57 | 69.77 | CDS | Transition | 0/1 | Protein transport protein SEC13 homolog B (SEC13-like protein B) |
| Scaffold_3988 | 9559 | C | T | 241 | 483.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3990 | 5525 | A | G | 21 | 62.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3993 | 6452 | T | C | 22 | 31.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_3994 | 12645 | T | C | 250 | 1314.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3994 | 12668 | A | G | 250 | 1018.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3994 | 12677 | T | C | 249 | 848.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3994 | 12678 | A | G | 250 | 1100.77 | intron | Transition | 0/1 | Unannotated |
| Scaffold_3996 | 20095 | C | T | 250 | 559.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3996 | 20348 | C | T | 22 | 321.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3996 | 20349 | T | C | 19 | 259.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_3998 | 26457 | C | T | 126 | 4545.77 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_4005 | 48203 | T | C | 244 | 108.77 | noncoding | Transition | 0/1 | Unannotated |