| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_4005 | 48204 | T | C | 248 | 1102.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4005 | 48210 | A | G | 241 | 230.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4005 | 48219 | A | G | 245 | 670.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4005 | 48220 | T | C | 248 | 230.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4005 | 48283 | A | G | 250 | 167.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4005 | 48303 | T | C | 250 | 242.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4005 | 48397 | T | C | 250 | 693.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4006 | 4324 | A | G | 17 | 285.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4006 | 4345 | C | T | 18 | 291.77 | CDS | Transition | 0/1 | Unannotated |
| Scaffold_4007 | 22933 | A | G | 94 | 158.77 | noncoding | Transition | 0/1 | Unannotated |
| Scaffold_4009 | 13643 | C | T | 241 | 2943.77 | noncoding | Transition | 0/1 | NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic (EC 7.1.1.-) (NAD(P)H dehydrogenase, subunit 2 B) (NADH-plastoquinone oxidoreductase subunit 2 B) |
| Scaffold_4013 | 19074 | C | T | 15 | 480.96 | noncoding | Transition | 1/1 | Unannotated |
| Scaffold_4013 | 22370 | G | A | 60 | 2236.77 | noncoding | Transition | 1/1 | Unannotated |