| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_44 | 497016 | C | G | 10 | 89.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 585315 | A | C | 16 | 49.77 | CDS | Transversion | 0/1 | L-lactate dehydrogenase A (LDH-A) (EC 1.1.1.27) |
| Scaffold_44 | 585316 | A | T | 16 | 52.77 | CDS | Transversion | 0/1 | L-lactate dehydrogenase A (LDH-A) (EC 1.1.1.27) |
| Scaffold_44 | 627651 | T | G | 35 | 47.77 | exon | Transversion | 0/1 | Histone H3.2 (Histone H3.1) (Major histone H3) |
| Scaffold_44 | 651434 | T | G | 23 | 84.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 691151 | C | A | 11 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 705492 | C | A | 28 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 724011 | T | G | 22 | 74.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 724129 | G | T | 13 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 905333 | A | T | 91 | 3329.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_44 | 905335 | G | C | 249 | 93.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 905336 | A | T | 249 | 187.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 905342 | A | C | 249 | 799.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 1200579 | G | T | 18 | 43.77 | CDS | Transversion | 0/1 | Probable solanesyl-diphosphate synthase 3, chloroplastic (OsSPS3) (EC 2.5.1.84) (Probable all-trans-nonaprenyl-diphosphate synthase 3 (geranyl-diphosphate specific)) |
| Scaffold_44 | 1240835 | T | A | 11 | 113.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 1337628 | T | A | 10 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 1358794 | T | A | 26 | 672.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 1360211 | T | A | 23 | 630.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_44 | 1360212 | A | T | 23 | 31.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 1393538 | G | C | 69 | 426.77 | exon | Transversion | 0/1 | Unannotated |