| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_44 | 1393540 | C | G | 76 | 410.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_44 | 1745627 | C | A | 33 | 31.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 68793 | T | G | 10 | 61.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 387487 | G | T | 214 | 587.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 387500 | A | C | 160 | 398.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 387677 | C | A | 250 | 1554.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 387797 | C | A | 222 | 200.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 387908 | A | C | 121 | 2057.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 388031 | C | A | 108 | 1498.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 388282 | T | G | 203 | 2291.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 388415 | A | T | 139 | 2321.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 388418 | T | A | 133 | 1351.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 681277 | T | G | 13 | 33.77 | CDS | Transversion | 0/1 | Glutamyl-tRNA reductase 1, chloroplastic (GluTR) (EC 1.2.1.70) |
| Scaffold_45 | 975651 | G | C | 15 | 423.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1270806 | C | A | 33 | 96.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1270808 | T | A | 20 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1498005 | A | C | 17 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1720622 | T | A | 19 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1720623 | T | G | 19 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_45 | 1820436 | T | G | 126 | 138.77 | exon | Transversion | 0/1 | Unannotated |