| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_48 | 1729383 | A | T | 22 | 88.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1805672 | T | G | 14 | 305.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1825972 | T | A | 30 | 50.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 1859701 | C | A | 29 | 44.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2010141 | T | G | 34 | 63.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2012088 | T | G | 15 | 43.77 | CDS | Transversion | 0/1 | VIN3-like protein 1 (Protein VERNALIZATION 5) |
| Scaffold_48 | 2018286 | A | C | 17 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2018287 | A | T | 20 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2260842 | G | C | 12 | 209.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2357958 | A | T | 13 | 61.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2358057 | T | G | 20 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_48 | 2358058 | T | A | 20 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_49 | 37754 | G | T | 84 | 2754.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_49 | 143544 | A | C | 24 | 31.77 | exon | Transversion | 0/1 | Coronatine-insensitive protein 1 (COI-1) (F-box/LRR-repeat protein 2) (AtCOI1) (AtFBL2) |
| Scaffold_49 | 430859 | C | A | 16 | 70.77 | exon | Transversion | 0/1 | Cationic amino acid transporter 5 |
| Scaffold_49 | 555028 | A | T | 23 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_49 | 821370 | A | C | 118 | 384.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_49 | 821993 | T | A | 32 | 71.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_49 | 896905 | G | C | 34 | 62.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_49 | 1302029 | A | C | 25 | 630.81 | exon | Transversion | 0/1 | Unannotated |