| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_50 | 1217039 | T | G | 15 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1222356 | A | C | 41 | 1239.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1477694 | T | G | 28 | 839.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_50 | 1748893 | T | A | 19 | 55.77 | CDS | Transversion | 0/1 | Protein NRT1/ PTR FAMILY 4.4 (AtNPF4.4) (Nitrate transporter 1.13) |
| Scaffold_50 | 1748897 | G | C | 17 | 49.77 | exon | Transversion | 0/1 | Protein NRT1/ PTR FAMILY 4.4 (AtNPF4.4) (Nitrate transporter 1.13) |
| Scaffold_51 | 382945 | G | C | 33 | 34.77 | CDS | Transversion | 0/1 | Probable beta-1,4-xylosyltransferase IRX10L (EC 2.4.2.-) (Glucuronoxylan glucuronosyltransferase 1) (AtGUT1) (Glucuronoxylan glucuronosyltransferase 2) (AtGUT2) (Protein IRREGULAR XYLEM 10-like) (Xylan xylosyltransferase IRX10L) |
| Scaffold_51 | 433982 | T | A | 62 | 626.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 437670 | A | C | 11 | 61.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 437778 | G | T | 28 | 314.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 438585 | G | C | 22 | 101.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 439076 | C | G | 17 | 126.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 441685 | T | A | 170 | 218.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 441738 | A | T | 115 | 359.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 643922 | T | A | 10 | 67.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 891099 | G | C | 122 | 135.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 891419 | T | A | 16 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 993657 | A | T | 18 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 1698681 | A | C | 11 | 64.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_51 | 1755454 | A | C | 12 | 108.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_52 | 63809 | C | G | 14 | 40.77 | exon | Transversion | 0/1 | Unannotated |