| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_55 | 1002374 | T | G | 10 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_55 | 1040823 | T | A | 15 | 75.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_55 | 1229231 | A | C | 10 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_55 | 1476902 | T | G | 28 | 81.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_55 | 1479835 | C | G | 12 | 42.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_55 | 1499371 | A | C | 13 | 104.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 34251 | T | G | 19 | 126.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 210635 | C | A | 10 | 30.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 454251 | T | A | 65 | 33.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 561020 | A | T | 19 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 893034 | A | T | 15 | 332.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 893091 | G | C | 10 | 220.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 1085263 | T | A | 10 | 184.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_56 | 1217430 | A | T | 12 | 336.74 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_56 | 1267370 | T | A | 29 | 337.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_57 | 233376 | C | A | 11 | 61.77 | CDS | Transversion | 0/1 | Transcription termination factor MTERF9, chloroplastic (Mitochondrial transcription termination factor 9) (Protein TWIRT1) |
| Scaffold_57 | 752469 | C | A | 16 | 33.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_57 | 753849 | G | C | 25 | 386.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_57 | 891358 | A | C | 10 | 58.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_57 | 934007 | G | T | 35 | 797.98 | CDS | Transversion | 0/1 | Retrovirus-related Pol polyprotein from transposon RE1 (Retro element 1) (AtRE1) [Includes: Protease RE1 (EC 3.4.23.-); Reverse transcriptase RE1 (EC 2.7.7.49); Endonuclease RE1] |