| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_61 | 15231 | G | C | 78 | 76.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 15318 | A | T | 211 | 4372.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 246748 | T | A | 12 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 246749 | A | T | 12 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 296963 | T | G | 19 | 107.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 580904 | A | T | 23 | 71.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1104273 | A | T | 11 | 39.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1430675 | C | G | 16 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_61 | 1516818 | T | A | 11 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 397085 | A | C | 35 | 388.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 397308 | A | T | 26 | 104.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 592081 | T | G | 16 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 928220 | T | A | 51 | 51.77 | CDS | Transversion | 0/1 | Granule-bound starch synthase 2, chloroplastic/amyloplastic (EC 2.4.1.21) (Granule-bound starch synthase II) (GBSS-II) (SS II) |
| Scaffold_62 | 1009937 | A | C | 12 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 1058739 | T | A | 248 | 7708.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_62 | 1058747 | T | A | 243 | 7830.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_62 | 1065429 | G | T | 250 | 325.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 1439241 | A | T | 17 | 54.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 1545369 | C | A | 10 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_62 | 1566968 | A | T | 250 | 698.77 | CDS | Transversion | 0/1 | Unannotated |