| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_64 | 714036 | T | G | 186 | 1368.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_64 | 819359 | A | T | 10 | 58.77 | exon | Transversion | 0/1 | Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 5 (EC 2.4.1.15) (Trehalose-6-phosphate synthase 5) (AtTPS5) |
| Scaffold_64 | 1144897 | A | C | 24 | 37.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 24907 | G | C | 14 | 83.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 36620 | C | G | 30 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 166896 | C | G | 21 | 84.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 166932 | T | G | 12 | 209.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 176093 | T | G | 70 | 257.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 176095 | G | C | 55 | 1113.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 176096 | G | T | 56 | 702.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 178113 | T | A | 19 | 442.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 558197 | C | A | 20 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 558198 | A | T | 23 | 80.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 736432 | A | C | 22 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 736433 | G | T | 22 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 1034735 | A | C | 11 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 1034835 | T | A | 21 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 1034836 | C | G | 21 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 1473305 | C | G | 17 | 154.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_65 | 1486827 | T | G | 250 | 7644.77 | noncoding | Transversion | 1/1 | Unannotated |