| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_67 | 1376528 | T | G | 32 | 56.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 431114 | A | T | 31 | 308.77 | noncoding | Transversion | 0/1 | Cyclic nucleotide-gated ion channel 1 (AtCNGC1) (Cyclic nucleotide- and calmodulin-regulated ion channel 1) |
| Scaffold_68 | 454398 | C | A | 15 | 138.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 454440 | G | C | 47 | 452.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 454512 | T | G | 58 | 467.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 552606 | T | A | 10 | 252.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 573482 | A | C | 12 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 573483 | A | T | 12 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_68 | 687633 | T | G | 10 | 116.77 | exon | Transversion | 0/1 | Protein NETWORKED 1D |
| Scaffold_68 | 689362 | A | T | 13 | 58.77 | exon | Transversion | 0/1 | Protein NETWORKED 1D |
| Scaffold_68 | 689461 | C | G | 23 | 46.77 | exon | Transversion | 0/1 | Protein NETWORKED 1D |
| Scaffold_68 | 747381 | A | T | 14 | 52.77 | CDS | Transversion | 0/1 | 30S ribosomal protein S9, mitochondrial |
| Scaffold_68 | 1030925 | A | T | 19 | 37.77 | exon | Transversion | 0/1 | Transcription factor AS1 (Myb-related protein 91) (AtMYB91) (Protein ASYMMETRIC LEAVES 1) (Protein PHANTASTICA) (AtPHAN) |
| Scaffold_69 | 380491 | A | T | 24 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 571426 | T | G | 59 | 950.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 571550 | T | G | 14 | 61.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 694004 | G | C | 12 | 89.77 | CDS | Transversion | 0/1 | Inducible nitrate reductase [NADH] 2 (NR) (EC 1.7.1.1) |
| Scaffold_69 | 704375 | G | C | 40 | 75.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 704376 | A | T | 40 | 69.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_69 | 778237 | C | G | 19 | 230.77 | CDS | Transversion | 0/1 | Unannotated |