| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_72 | 443769 | C | G | 53 | 216.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 454379 | A | T | 18 | 520.94 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_72 | 562736 | T | G | 12 | 55.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 563162 | T | G | 84 | 293.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 563741 | G | T | 10 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 563743 | A | T | 12 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 874099 | G | T | 21 | 49.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 874199 | T | A | 31 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_72 | 934638 | T | A | 10 | 30.77 | exon | Transversion | 0/1 | tRNA-splicing endonuclease subunit Sen2-2 (EC 4.6.1.16) (tRNA-intron endonuclease Sen2-2) (AtSen2) |
| Scaffold_73 | 271560 | C | G | 10 | 119.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_73 | 517373 | T | G | 27 | 728.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_73 | 523870 | C | A | 11 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_73 | 681192 | C | A | 14 | 89.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_73 | 854612 | A | T | 18 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_73 | 854713 | C | G | 10 | 67.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_73 | 1146930 | C | G | 10 | 67.77 | CDS | Transversion | 0/1 | TMV resistance protein N |
| Scaffold_74 | 224575 | A | T | 12 | 39.77 | CDS | Transversion | 0/1 | SWI/SNF complex subunit SWI3D (AtSWI3D) (Transcription regulatory protein SWI3D) |
| Scaffold_74 | 453018 | A | T | 24 | 40.77 | CDS | Transversion | 0/1 | Probable protein phosphatase 2C 73 (AtPP2C73) (EC 3.1.3.16) (AtPPC6;7) |
| Scaffold_74 | 513070 | A | T | 20 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_74 | 639505 | G | T | 242 | 6910.77 | exon | Transversion | 1/1 | Protein ALP1-like (EC 3.1.-.-) |