| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_91 | 88551 | C | G | 15 | 193.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_91 | 88682 | G | C | 11 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_91 | 326510 | A | C | 12 | 64.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_91 | 348297 | T | G | 113 | 180.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 89277 | G | C | 33 | 303.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 143349 | C | A | 47 | 35.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 143350 | T | G | 42 | 38.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 163181 | A | T | 10 | 30.77 | exon | Transversion | 0/1 | Probable LRR receptor-like serine/threonine-protein kinase At4g36180 (EC 2.7.11.1) |
| Scaffold_94 | 351268 | C | A | 98 | 443.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 351945 | G | T | 81 | 235.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_94 | 352052 | C | A | 81 | 764.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_95 | 20096 | G | T | 18 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_95 | 123366 | A | C | 15 | 40.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_96 | 276137 | G | C | 11 | 92.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_97 | 67589 | A | C | 12 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_97 | 67590 | G | T | 12 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_97 | 159555 | A | T | 12 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_98 | 362732 | A | T | 12 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 24765 | C | A | 19 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_99 | 29809 | A | C | 41 | 725.77 | intron | Transversion | 0/1 | Unannotated |