| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_99 | 30061 | G | C | 248 | 77.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 47861 | A | T | 11 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 138915 | T | G | 16 | 163.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 194665 | A | T | 14 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_100 | 273514 | T | A | 15 | 46.77 | exon | Transversion | 0/1 | Uncharacterized protein At5g39865 |
| Scaffold_100 | 430303 | T | A | 14 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_101 | 49594 | T | A | 19 | 34.77 | exon | Transversion | 0/1 | Zinc-finger homeodomain protein 9 (AtZHD9) (Homeobox protein 34) (AtHB-34) |
| Scaffold_101 | 321923 | G | T | 88 | 1011.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_101 | 367170 | T | G | 12 | 30.77 | CDS | Transversion | 0/1 | Purple acid phosphatase 8 (EC 3.1.3.2) |
| Scaffold_102 | 2467 | A | T | 16 | 52.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_102 | 25984 | T | G | 14 | 323.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_102 | 266973 | A | C | 30 | 59.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_102 | 267276 | A | C | 10 | 64.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_102 | 267277 | A | T | 10 | 61.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_102 | 402519 | T | G | 16 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_104 | 33685 | C | G | 11 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_104 | 123066 | G | T | 13 | 52.77 | exon | Transversion | 0/1 | Protein NBR1 homolog (AtNBR1) (At4g24690) |
| Scaffold_104 | 126562 | T | G | 15 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_104 | 178800 | A | C | 13 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_104 | 195237 | G | C | 15 | 163.77 | intron | Transversion | 0/1 | Unannotated |