| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_108 | 34583 | A | T | 10 | 30.77 | exon | Transversion | 0/1 | COMPASS-like H3K4 histone methylase component WDR5A (AtWDR5A) |
| Scaffold_108 | 239420 | T | A | 29 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_109 | 18600 | C | G | 10 | 67.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_109 | 114368 | C | G | 14 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_109 | 242081 | T | G | 11 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_109 | 423587 | A | T | 64 | 57.77 | exon | Transversion | 0/1 | Probable xyloglucan endotransglucosylase/hydrolase protein 23 (At-XTH23) (XTH-23) (EC 2.4.1.207) |
| Scaffold_110 | 61076 | A | T | 11 | 215.41 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_110 | 111224 | A | C | 156 | 105.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_110 | 433837 | A | C | 17 | 154.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_111 | 281364 | G | T | 21 | 77.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_111 | 290956 | G | T | 54 | 45.77 | exon | Transversion | 0/1 | Serine decarboxylase (AtSDC) (EC 4.1.1.-) (Protein EMBRYO DEFECTIVE 1075) (Serine decarboxylase 1) (AtSDC1) |
| Scaffold_111 | 291299 | A | C | 10 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_111 | 293104 | A | C | 35 | 1053.03 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 108876 | C | G | 10 | 141.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 109054 | T | A | 13 | 246.8 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 277174 | A | C | 24 | 56.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 277321 | T | A | 14 | 80.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_112 | 394580 | A | C | 16 | 43.77 | CDS | Transversion | 0/1 | Squalene epoxidase 2, mitochondrial (AtSQE2) (EC 1.14.14.17) |
| Scaffold_112 | 396735 | T | G | 10 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_113 | 358180 | A | T | 11 | 36.77 | CDS | Transversion | 0/1 | Unannotated |