| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_134 | 327569 | G | T | 10 | 203.8 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_134 | 385716 | A | T | 21 | 527.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_134 | 392366 | A | C | 19 | 55.77 | CDS | Transversion | 0/1 | Glutamate decarboxylase 1 (GAD 1) (EC 4.1.1.15) |
| Scaffold_134 | 392914 | T | G | 35 | 78.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_135 | 9927 | G | C | 15 | 58.77 | exon | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At5g39710 (Protein EMBRYO DEFECTIVE 2745) |
| Scaffold_135 | 9928 | A | T | 15 | 61.77 | exon | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At5g39710 (Protein EMBRYO DEFECTIVE 2745) |
| Scaffold_135 | 144772 | C | A | 21 | 205.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_135 | 405524 | G | T | 37 | 963.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_136 | 82157 | A | T | 223 | 7646.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_136 | 84346 | T | G | 18 | 471.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_136 | 84349 | G | T | 13 | 246.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_136 | 87840 | T | G | 67 | 2057.53 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_136 | 201507 | T | A | 11 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_138 | 240058 | T | A | 43 | 38.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_138 | 255805 | A | T | 17 | 49.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_138 | 307135 | C | A | 11 | 312.18 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 7324 | T | A | 11 | 32.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 40519 | C | G | 11 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 75462 | C | A | 14 | 61.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 98991 | T | A | 10 | 30.77 | CDS | Transversion | 0/1 | T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin CCT3) |