| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_140 | 98992 | T | G | 10 | 30.77 | CDS | Transversion | 0/1 | T-complex protein 1 subunit gamma (TCP-1-gamma) (CCT-gamma) (Chaperonin CCT3) |
| Scaffold_140 | 318327 | A | T | 13 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 455869 | A | T | 29 | 62.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 455968 | C | A | 21 | 52.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_140 | 517832 | C | A | 14 | 86.77 | exon | Transversion | 0/1 | F-box/LRR-repeat protein At4g29420 |
| Scaffold_140 | 546482 | G | C | 33 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_141 | 299970 | C | A | 47 | 613.82 | CDS | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 302409 | C | A | 68 | 132.77 | CDS | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 302918 | A | T | 41 | 1257.77 | CDS | Transversion | 1/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 302949 | G | T | 13 | 178.77 | CDS | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 305572 | C | A | 13 | 266.77 | exon | Transversion | 0/1 | Soyasaponin III rhamnosyltransferase (EC 2.4.1.273) (Soyasaponin glycosyltransferase 3) (UDP-rhamnose:soyasaponin III-rhamnosyltransferase) |
| Scaffold_141 | 311019 | A | C | 30 | 98.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_141 | 418058 | A | C | 21 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_141 | 532158 | A | C | 38 | 44.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_141 | 532159 | A | T | 39 | 41.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_142 | 18014 | T | G | 19 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_142 | 207124 | C | G | 226 | 303.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_143 | 125358 | A | T | 10 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_143 | 391458 | G | C | 15 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_143 | 421349 | A | C | 16 | 40.77 | exon | Transversion | 0/1 | Unannotated |