| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_152 | 419186 | G | C | 115 | 343.77 | exon | Transversion | 0/1 | DNA damage-repair/toleration protein DRT100 |
| Scaffold_152 | 489454 | C | G | 23 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_152 | 537889 | C | A | 19 | 54.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_152 | 537929 | A | C | 44 | 1200.79 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_152 | 546016 | G | C | 22 | 166.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_152 | 546073 | C | G | 27 | 264.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_152 | 546182 | A | T | 24 | 416.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_152 | 623560 | G | T | 12 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_153 | 440449 | T | G | 23 | 37.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_154 | 30910 | C | A | 13 | 36.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_155 | 167613 | G | T | 21 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_155 | 376427 | G | T | 76 | 1056.77 | intron | Transversion | 0/1 | Ferredoxin-dependent glutamate synthase (EC 1.4.7.1) (FD-GOGAT) (Fragment) |
| Scaffold_156 | 55196 | T | A | 16 | 43.77 | exon | Transversion | 0/1 | Transcription factor MYC2 (AtMYC2) (Basic helix-loop-helix protein 6) (AtbHLH6) (bHLH 6) (Protein JASMONATE INSENSITIVE 1) (R-homologous Arabidopsis protein 1) (RAP-1) (Transcription factor EN 38) (Z-box binding factor 1 protein) (bHLH transcription facto |
| Scaffold_156 | 173782 | A | T | 45 | 54.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_156 | 174049 | G | C | 10 | 101.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_156 | 175060 | G | C | 30 | 38.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_156 | 199858 | T | A | 27 | 31.77 | intron | Transversion | 0/1 | General transcription and DNA repair factor IIH helicase subunit XPB1 (TFIIH subunit XPB) (EC 3.6.4.12) (ERCC3 homolog 1) (Protein araXPB) (RAD25 homolog 1) (AtXPB1) (XPB homolog 1) |
| Scaffold_156 | 200138 | T | A | 11 | 132.77 | intron | Transversion | 0/1 | General transcription and DNA repair factor IIH helicase subunit XPB1 (TFIIH subunit XPB) (EC 3.6.4.12) (ERCC3 homolog 1) (Protein araXPB) (RAD25 homolog 1) (AtXPB1) (XPB homolog 1) |
| Scaffold_156 | 234199 | A | C | 10 | 169.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_157 | 11013 | G | T | 19 | 402.77 | intron | Transversion | 0/1 | Unannotated |