| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_173 | 319955 | A | C | 20 | 250.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_173 | 427797 | T | A | 14 | 202.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_173 | 427849 | G | C | 34 | 37.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_173 | 442669 | G | T | 10 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_173 | 565534 | T | A | 23 | 46.77 | exon | Transversion | 0/1 | Calcium-dependent protein kinase 19 (OsCDPK19) (OsCPK19) (EC 2.7.11.1) (Calcium-dependent protein kinase isoform 2) (OsCDPK2) (OsCPK2) |
| Scaffold_174 | 136121 | G | C | 35 | 352.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_174 | 136122 | A | C | 36 | 602.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_174 | 357805 | T | A | 10 | 58.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_175 | 222609 | A | T | 33 | 676.77 | CDS | Transversion | 0/1 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_175 | 222747 | G | T | 16 | 294.77 | intron | Transversion | 0/1 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_175 | 462129 | T | A | 12 | 36.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_175 | 511452 | G | C | 21 | 43.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_175 | 632353 | A | T | 10 | 70.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_175 | 632401 | A | C | 15 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_175 | 733093 | T | G | 21 | 43.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_175 | 733102 | T | A | 16 | 112.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_176 | 70910 | T | G | 21 | 37.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_176 | 118503 | C | G | 20 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_176 | 172293 | T | A | 11 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_176 | 362675 | C | G | 29 | 156.77 | CDS | Transversion | 0/1 | Unannotated |