| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_180 | 498394 | T | A | 33 | 62.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_180 | 498845 | A | T | 21 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_180 | 514346 | G | T | 18 | 43.77 | intron | Transversion | 0/1 | Notchless protein homolog |
| Scaffold_181 | 425676 | A | T | 21 | 564.94 | CDS | Transversion | 0/1 | Calcium-dependent protein kinase 1 (OsCDPK1) (OsCPK1) (EC 2.7.11.1) |
| Scaffold_181 | 481087 | C | A | 35 | 81.77 | exon | Transversion | 0/1 | Probable isoaspartyl peptidase/L-asparaginase 2 (EC 3.4.19.5) (L-asparagine amidohydrolase 2) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 2 subunit alpha; Isoaspartyl peptidase/L-asparaginase 2 subunit beta] |
| Scaffold_181 | 481088 | C | G | 32 | 84.77 | exon | Transversion | 0/1 | Probable isoaspartyl peptidase/L-asparaginase 2 (EC 3.4.19.5) (L-asparagine amidohydrolase 2) [Cleaved into: Isoaspartyl peptidase/L-asparaginase 2 subunit alpha; Isoaspartyl peptidase/L-asparaginase 2 subunit beta] |
| Scaffold_181 | 584537 | A | T | 10 | 187.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_181 | 677065 | G | C | 20 | 86.77 | CDS | Transversion | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 677066 | A | T | 20 | 89.77 | CDS | Transversion | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 677166 | C | G | 37 | 65.77 | CDS | Transversion | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 691826 | A | T | 18 | 52.77 | CDS | Transversion | 0/1 | Auxin transport protein BIG (Protein ATTENUATED SHADE AVOIDANCE 1) (Protein CORYMBOSA1) (Protein DARK OVER-EXPRESSION OF CAB 1) (Protein LOW PHOSPHATE-RESISTANT ROOT 1) (Protein TRANSPORT INHIBITOR RESPONSE 3) (Protein UMBRELLA 1) |
| Scaffold_181 | 718364 | C | A | 18 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_181 | 849701 | T | A | 22 | 65.77 | CDS | Transversion | 0/1 | DNA-directed RNA polymerase II subunit 2 (DNA-directed RNA polymerase II 135 kDa polypeptide) (DNA-directed RNA polymerase II subunit RPB2) (RNA polymerase II subunit 2) (RNA polymerase II subunit B2) (EC 2.7.7.6) (Protein EMBRYO DEFECTIVE 1989) |
| Scaffold_182 | 7234 | T | A | 10 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_182 | 7235 | C | G | 10 | 30.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_188 | 27218 | A | C | 53 | 54.77 | exon | Transversion | 0/1 | Fatty acid hydroperoxide lyase, chloroplastic (LeHPL) (EC 4.2.99.-) (Cytochrome P450 74B) |
| Scaffold_192 | 33799 | C | A | 14 | 55.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 33801 | C | G | 23 | 361.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_192 | 73410 | A | C | 11 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_196 | 11773 | A | T | 11 | 39.77 | exon | Transversion | 0/1 | GDSL esterase/lipase CPRD49 (EC 3.1.1.-) (Extracellular lipase CPRD49) |