| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_198 | 5647 | A | C | 11 | 129.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_198 | 76663 | A | C | 62 | 289.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_198 | 77451 | T | A | 15 | 200.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_208 | 30225 | A | T | 18 | 33.77 | exon | Transversion | 0/1 | Disease resistance protein RPP13 (Resistance to Peronospora parasitica protein 13) |
| Scaffold_211 | 33760 | C | A | 59 | 42.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_213 | 3415 | C | A | 72 | 247.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_213 | 3429 | C | G | 85 | 504.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_213 | 3431 | G | T | 87 | 1529.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_214 | 1839 | G | T | 30 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_214 | 1939 | C | A | 14 | 46.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_236 | 51277 | G | C | 28 | 50.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_237 | 12352 | C | A | 18 | 40.77 | CDS | Transversion | 0/1 | ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) |
| Scaffold_237 | 12353 | T | G | 18 | 43.77 | CDS | Transversion | 0/1 | ABC transporter B family member 1 (ABC transporter ABCB.1) (AtABCB1) (Multidrug resistance protein 1) (P-glycoprotein 1) (AtPgp1) |
| Scaffold_241 | 6186 | G | C | 14 | 46.77 | CDS | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Protein EMBRYO DEFECTIVE 2279) |
| Scaffold_241 | 6187 | A | T | 16 | 40.77 | CDS | Transversion | 0/1 | Pentatricopeptide repeat-containing protein At1g30610, chloroplastic (Protein EMBRYO DEFECTIVE 2279) |
| Scaffold_243 | 15490 | A | T | 23 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_244 | 56443 | A | C | 46 | 348.77 | CDS | Transversion | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_244 | 56458 | C | A | 45 | 348.77 | CDS | Transversion | 0/1 | Zinc finger CCCH domain-containing protein 40 (OsC3H40) |
| Scaffold_249 | 10673 | A | C | 22 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_256 | 39506 | C | G | 10 | 39.77 | intron | Transversion | 0/1 | Unannotated |