| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_458 | 29682 | A | C | 42 | 702.77 | exon | Transversion | 0/1 | Eukaryotic translation initiation factor 5 (eIF-5) |
| Scaffold_458 | 30236 | A | C | 250 | 175.77 | exon | Transversion | 0/1 | Eukaryotic translation initiation factor 5 (eIF-5) |
| Scaffold_458 | 30294 | A | C | 248 | 440.77 | exon | Transversion | 0/1 | Eukaryotic translation initiation factor 5 (eIF-5) |
| Scaffold_458 | 30470 | A | T | 124 | 878.77 | exon | Transversion | 0/1 | Eukaryotic translation initiation factor 5 (eIF-5) |
| Scaffold_458 | 30596 | T | A | 250 | 2279.77 | exon | Transversion | 0/1 | Eukaryotic translation initiation factor 5 (eIF-5) |
| Scaffold_461 | 54393 | T | A | 11 | 206.78 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_464 | 9028 | G | C | 18 | 52.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_471 | 52558 | G | C | 12 | 55.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_477 | 8471 | T | G | 10 | 61.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_484 | 30123 | C | A | 11 | 61.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_484 | 30133 | C | A | 15 | 181.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_484 | 30134 | A | T | 15 | 206.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_492 | 30509 | G | T | 69 | 113.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_492 | 30510 | T | G | 59 | 32.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_492 | 44782 | A | C | 20 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_494 | 49714 | A | T | 27 | 46.77 | CDS | Transversion | 0/1 | UV-B-induced protein At3g17800, chloroplastic |
| Scaffold_495 | 51517 | G | T | 13 | 49.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_496 | 2005 | G | T | 13 | 141.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_496 | 2006 | A | C | 13 | 141.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_496 | 26414 | T | G | 16 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |