| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_576 | 8094 | C | G | 14 | 55.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_581 | 40367 | A | C | 40 | 118.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_581 | 40468 | C | G | 41 | 66.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_586 | 70523 | A | C | 19 | 40.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_590 | 42737 | T | G | 19 | 31.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_591 | 20109 | T | A | 18 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_603 | 66438 | C | G | 15 | 36.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_623 | 31346 | C | A | 13 | 317.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_626 | 8975 | G | C | 50 | 354.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_626 | 8976 | G | T | 177 | 84.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_626 | 9050 | A | T | 248 | 385.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_627 | 42370 | A | T | 20 | 34.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_633 | 19128 | T | G | 16 | 78.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_634 | 61399 | T | A | 250 | 30.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_634 | 61422 | A | C | 250 | 322.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_636 | 59730 | C | G | 12 | 49.77 | CDS | Transversion | 0/1 | Cleavage and polyadenylation specificity factor subunit 3-II (EC 3.1.27.-) (Cleavage and polyadenylation specificity factor 73 kDa subunit II) (AtCPSF73-II) (CPSF 73 kDa subunit II) (Protein EMBRYO SAC DEVELOPMENT ARREST 26) |
| Scaffold_647 | 66466 | T | G | 33 | 484.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 19028 | A | C | 134 | 803.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 19029 | A | T | 178 | 1979.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 19030 | G | C | 249 | 46.77 | noncoding | Transversion | 0/1 | Unannotated |