| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_649 | 19129 | C | G | 100 | 964.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_649 | 19130 | T | G | 14 | 258.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_651 | 66673 | A | T | 10 | 33.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_657 | 5980 | A | T | 30 | 56.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_657 | 5981 | G | C | 32 | 47.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_657 | 6080 | T | A | 28 | 53.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_657 | 6081 | C | G | 26 | 62.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_658 | 5377 | A | T | 12 | 268.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_662 | 68149 | G | C | 16 | 49.77 | CDS | Transversion | 0/1 | Long chain acyl-CoA synthetase 9, chloroplastic (EC 6.2.1.3) |
| Scaffold_663 | 41125 | C | A | 13 | 154.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_664 | 20309 | G | T | 11 | 178.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 43810 | T | G | 39 | 142.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 43840 | G | T | 38 | 295.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 44182 | C | A | 34 | 394.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_669 | 45842 | T | A | 76 | 288.77 | CDS | Transversion | 0/1 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34) |
| Scaffold_673 | 4574 | G | C | 65 | 103.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_673 | 57176 | A | C | 25 | 108.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_675 | 25772 | T | A | 11 | 47.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_675 | 56492 | A | T | 25 | 34.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_679 | 44844 | C | A | 30 | 31.77 | CDS | Transversion | 0/1 | Unannotated |