| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_965 | 58012 | T | G | 13 | 49.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_967 | 33095 | C | G | 41 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_974 | 49047 | A | T | 23 | 31.77 | CDS | Transversion | 0/1 | ATP sulfurylase 2 (EC 2.7.7.4) |
| Scaffold_980 | 1700 | A | T | 23 | 618.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_990 | 6158 | A | C | 165 | 250.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_990 | 6313 | A | C | 249 | 1243.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_990 | 6390 | C | G | 248 | 372.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_993 | 38677 | C | A | 61 | 1459.77 | exon | Transversion | 1/1 | Peptidyl-prolyl cis-trans isomerase CYP19-3 (PPIase CYP19-3) (EC 5.2.1.8) (Cyclophilin of 19 kDa 3) (Cyclophilin-4) (Rotamase cyclophilin-2) |
| Scaffold_1009 | 54845 | T | A | 25 | 65.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1009 | 54846 | C | G | 24 | 65.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1010 | 17255 | T | A | 13 | 52.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1011 | 54995 | G | T | 175 | 1332.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1011 | 55180 | T | G | 82 | 2060.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_1013 | 54584 | A | C | 15 | 86.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1013 | 55732 | A | T | 42 | 106.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1028 | 48543 | T | A | 13 | 126.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1028 | 48545 | T | A | 10 | 89.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1043 | 25843 | T | G | 13 | 60.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1043 | 25938 | C | G | 46 | 679.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1047 | 9112 | G | C | 11 | 52.77 | CDS | Transversion | 0/1 | Probable carboxylesterase 17 (AtCXE17) (EC 3.1.1.1) |