| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_1060 | 32153 | A | C | 32 | 33.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1066 | 38009 | T | A | 45 | 30.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1066 | 38108 | C | A | 19 | 46.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1077 | 54191 | G | C | 13 | 39.77 | CDS | Transversion | 0/1 | Urea-proton symporter DUR3 (AtDUR3) (High-affinity urea active transporter DUR3) |
| Scaffold_1080 | 6115 | T | A | 10 | 104.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_1085 | 8969 | A | C | 25 | 40.77 | CDS | Transversion | 0/1 | Eukaryotic translation initiation factor 3 subunit D (eIF3d) (Eukaryotic translation initiation factor 3 subunit 7) (eIF-3-zeta) (p66) |
| Scaffold_1101 | 4614 | A | T | 14 | 400.89 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_1102 | 47015 | G | T | 35 | 782.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1102 | 47016 | A | T | 35 | 788.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1117 | 15724 | G | T | 42 | 907.77 | noncoding | Transversion | 0/1 | 60S ribosomal protein L7-2 |
| Scaffold_1124 | 50148 | A | T | 27 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1124 | 50149 | A | C | 27 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1126 | 46559 | A | T | 10 | 172.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1135 | 24722 | A | T | 10 | 64.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_1148 | 37470 | G | C | 40 | 93.77 | CDS | Transversion | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1153 | 51299 | A | T | 13 | 323.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1180 | 18895 | C | G | 16 | 40.77 | noncoding | Transversion | 0/1 | Unannotated |
| Scaffold_1182 | 39098 | T | A | 10 | 30.77 | CDS | Transversion | 0/1 | Sphingoid long-chain bases kinase 1 (AtLCBK1) (LCB kinase 1) (EC 2.7.-.-) (Sphingosine kinase 1) |
| Scaffold_1182 | 48770 | C | G | 21 | 37.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_1182 | 48771 | C | A | 21 | 37.77 | exon | Transversion | 0/1 | Unannotated |