| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_523 | 49303 | T | C | 250 | 2423.77 | CDS | Transition | 0/1 | Calnexin homolog |
| Scaffold_523 | 49378 | A | G | 198 | 1148.77 | CDS | Transition | 0/1 | Calnexin homolog |
| Scaffold_523 | 49408 | T | C | 131 | 1086.77 | CDS | Transition | 0/1 | Calnexin homolog |
| Scaffold_523 | 49414 | A | G | 128 | 618.77 | CDS | Transition | 0/1 | Calnexin homolog |
| Scaffold_51 | 428397 | G | A | 10 | 278.03 | intron | Transition | 0/1 | Calnexin homolog 2 |
| Scaffold_2906 | 3829 | A | G | 250 | 9015.77 | exon | Transition | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_2906 | 3850 | A | G | 250 | 8850.77 | exon | Transition | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_2906 | 3997 | T | C | 19 | 529.77 | intron | Transition | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_2906 | 4039 | A | G | 11 | 310.78 | CDS | Transition | 1/1 | Catalase (EC 1.11.1.6) |
| Scaffold_38 | 56584 | C | T | 13 | 113.77 | CDS | Transition | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_38 | 56607 | C | T | 29 | 559.77 | CDS | Transition | 0/1 | CDPK-related kinase 1 (AtCRK1) (EC 2.7.11.1) (Calcium/calmodulin-dependent protein kinase 3) (Calmodulin-binding protein kinase 3) (AtCBK3) (CaM-binding protein kinase 3) |
| Scaffold_2570 | 61328 | T | C | 30 | 632.77 | CDS | Transition | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61397 | A | G | 145 | 547.77 | CDS | Transition | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_2570 | 61486 | G | A | 96 | 713.77 | CDS | Transition | 0/1 | Cell division cycle 20.1, cofactor of APC complex (AtCDC20.1) |
| Scaffold_335 | 43256 | T | C | 90 | 2537.77 | noncoding | Transition | 0/1 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_335 | 43259 | G | A | 90 | 2629.77 | noncoding | Transition | 0/1 | Cellulose synthase A catalytic subunit 1 [UDP-forming] (AtCesA1) (EC 2.4.1.12) (Protein RADIALLY SWOLLEN 1) (AtRSW1) |
| Scaffold_3301 | 36377 | A | G | 18 | 579.77 | exon | Transition | 1/1 | Cellulose synthase-like protein B4 (AtCslB4) (EC 2.4.1.-) |
| Scaffold_3025 | 45725 | A | G | 34 | 39.77 | noncoding | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3025 | 45736 | T | A,C | 26 | 833.77 | noncoding | Transition | 1/2 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |
| Scaffold_3025 | 45741 | G | A | 26 | 626.77 | noncoding | Transition | 0/1 | Cellulose synthase-like protein D3 (AtCslD3) (EC 2.4.1.-) (Protein KOJAK) |