| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_2 | 736849 | C | T | 14 | 362.78 | exon | Transition | 1/1 | Cytochrome c-type biogenesis protein CcmE homolog, mitochondrial (Cytochrome c maturation protein E homolog) (AtCCME) (Heme chaperone CcmE homolog) |
| Scaffold_51 | 109358 | G | A | 29 | 167.77 | noncoding | Transition | 0/1 | Cytochrome P450 709B2 (EC 1.14.-.-) |
| Scaffold_51 | 116244 | G | A | 19 | 447.77 | noncoding | Transition | 0/1 | Cytochrome P450 709B2 (EC 1.14.-.-) |
| Scaffold_180 | 317412 | G | A,C | 13 | 402.77 | CDS | Transition | 1/2 | Cytochrome P450 81D1 (EC 1.14.-.-) |
| Scaffold_46 | 1258607 | A | G | 172 | 3022.77 | CDS | Transition | 0/1 | Cytochrome P450 81E8 (EC 1.14.13.-) |
| Scaffold_46 | 1258691 | C | T | 158 | 2421.77 | CDS | Transition | 0/1 | Cytochrome P450 81E8 (EC 1.14.13.-) |
| Scaffold_46 | 1258713 | A | G | 63 | 737.77 | CDS | Transition | 0/1 | Cytochrome P450 81E8 (EC 1.14.13.-) |
| Scaffold_1073 | 47132 | G | A | 10 | 72.77 | noncoding | Transition | 0/1 | Cytochrome P450 82A4 (EC 1.14.-.-) (Cytochrome P450 CP9) |
| Scaffold_1073 | 47176 | G | A | 10 | 116.77 | noncoding | Transition | 0/1 | Cytochrome P450 82A4 (EC 1.14.-.-) (Cytochrome P450 CP9) |
| Scaffold_435 | 24896 | C | T | 10 | 265.8 | exon | Transition | 1/1 | Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) |
| Scaffold_2677 | 161386 | A | G | 20 | 34.77 | intron | Transition | 0/1 | DEAD-box ATP-dependent RNA helicase 22 (EC 3.6.4.13) |
| Scaffold_148 | 124032 | T | C | 31 | 1096.77 | intron | Transition | 1/1 | DEAD-box ATP-dependent RNA helicase 53 (EC 3.6.4.13) |
| Scaffold_802 | 1844 | T | C | 19 | 551.77 | CDS | Transition | 1/1 | Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) |
| Scaffold_802 | 1853 | C | T | 25 | 711.77 | CDS | Transition | 1/1 | Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) |
| Scaffold_802 | 2160 | G | A | 26 | 550.77 | CDS | Transition | 0/1 | Dihydropyrimidinase (EC 3.5.2.2) (Dihydropyrimidine amidohydrolase) (Protein PYRIMIDINE 2) |
| Scaffold_126 | 423220 | C | T | 15 | 393.77 | CDS | Transition | 1/1 | Disease resistance-like protein DSC1 (Protein DOMINANT SUPPRESSOR OF CAMTA3 NUMBER 1) |
| Scaffold_3113 | 50322 | G | A | 65 | 100.77 | noncoding | Transition | 0/1 | DNA-directed RNA polymerase subunit alpha (PEP) (EC 2.7.7.6) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) |
| Scaffold_2930 | 34440 | C | T | 250 | 119.77 | noncoding | Transition | 0/1 | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) |
| Scaffold_3232 | 16701 | C | T | 185 | 4630.77 | exon | Transition | 0/1 | DNA-directed RNA polymerase subunit beta (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) |
| Scaffold_2932 | 19878 | C | T | 13 | 86.77 | noncoding | Transition | 0/1 | DNA-directed RNA polymerase subunit beta' (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase subunit beta') (RNA polymerase subunit beta') |