| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_47 | 1151809 | A | G | 250 | 2401.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151941 | A | G | 233 | 4573.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1151953 | C | T | 221 | 771.77 | CDS | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1154147 | T | C | 45 | 1262.77 | exon | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_47 | 1154153 | C | T | 14 | 228.77 | exon | Transition | 0/1 | Elongation factor 2 (EF-2) (Protein LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1) |
| Scaffold_12 | 478708 | A | G | 11 | 298.56 | intron | Transition | 0/1 | Elongation factor G-1, chloroplastic (cEF-G 1) |
| Scaffold_18 | 106589 | C | T | 17 | 491.1 | exon | Transition | 1/1 | Endochitinase (EC 3.2.1.14) |
| Scaffold_18 | 106598 | T | C | 51 | 1650.77 | exon | Transition | 1/1 | Endochitinase (EC 3.2.1.14) |
| Scaffold_2693 | 38766 | C | T | 38 | 993.18 | CDS | Transition | 1/1 | Endoglucanase 6 (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) |
| Scaffold_76 | 209637 | T | C | 44 | 1270.77 | CDS | Transition | 1/1 | ENHANCER OF AG-4 protein 2 (Protein AERIAL ROSETTE 1) |
| Scaffold_27 | 730367 | C | T | 23 | 114.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_27 | 730406 | G | A | 23 | 108.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_27 | 731260 | T | C | 30 | 353.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 7883 | T | C | 33 | 607.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 8270 | A | G | 55 | 598.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_1407 | 8352 | G | A | 88 | 832.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) |
| Scaffold_3862 | 35351 | T | C | 34 | 392.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35441 | G | A | 40 | 281.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35456 | T | C | 33 | 289.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |
| Scaffold_3862 | 35750 | T | C | 13 | 61.77 | CDS | Transition | 0/1 | Eukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110) (p82) |