| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_343 | 65589 | G | A | 10 | 112.77 | CDS | Transition | 0/1 | 3-dehydroquinate synthase, chloroplastic (EC 4.2.3.4) |
| Scaffold_669 | 45817 | A | G | 35 | 439.77 | CDS | Transition | 0/1 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34) |
| Scaffold_669 | 45824 | T | C | 35 | 446.77 | CDS | Transition | 0/1 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (EC 1.1.1.34) |
| Scaffold_147 | 538861 | A | G | 57 | 1415.77 | CDS | Transition | 0/1 | 3-ketoacyl-CoA synthase 11 (KCS-11) (EC 2.3.1.199) (Very long-chain fatty acid condensing enzyme 11) (VLCFA condensing enzyme 11) |
| Scaffold_3222 | 81746 | C | T | 250 | 6009.77 | CDS | Transition | 0/1 | 40S ribosomal protein S10, mitochondrial |
| Scaffold_5 | 395466 | T | C | 175 | 1747.77 | CDS | Transition | 0/1 | 40S ribosomal protein S10-3 |
| Scaffold_5 | 395469 | C | T | 177 | 1780.77 | CDS | Transition | 0/1 | 40S ribosomal protein S10-3 |
| Scaffold_2438 | 126493 | T | C | 23 | 31.77 | CDS | Transition | 0/1 | 40S ribosomal protein S12 |
| Scaffold_1698 | 40329 | A | G | 10 | 338.77 | exon | Transition | 1/1 | 40S ribosomal protein S4 |
| Scaffold_175 | 222693 | A | G | 53 | 168.77 | CDS | Transition | 0/1 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_175 | 222717 | T | C | 43 | 82.77 | CDS | Transition | 0/1 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_175 | 222723 | G | A | 42 | 274.77 | CDS | Transition | 0/1 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_175 | 222729 | T | C | 41 | 784.77 | CDS | Transition | 0/1 | 40S ribosomal protein S5 (Fragment) |
| Scaffold_3639 | 22831 | T | C | 229 | 8934.77 | noncoding | Transition | 1/1 | 50S ribosomal protein L2, chloroplastic |
| Scaffold_3641 | 43067 | C | T | 35 | 1198.77 | noncoding | Transition | 1/1 | 50S ribosomal protein L2, chloroplastic (Chloroplastic large ribosomal subunit protein uL2c) (Ribosomal protein CS-L4) |
| Scaffold_3763 | 81906 | C | T | 151 | 173.9 | noncoding | Transition | 1/1 | 50S ribosomal protein L23, chloroplastic |
| Scaffold_3763 | 81924 | C | T | 166 | 92.28 | noncoding | Transition | 1/1 | 50S ribosomal protein L23, chloroplastic |
| Scaffold_298 | 71018 | G | A | 26 | 95.77 | intron | Transition | 0/1 | 50S ribosomal protein L35, chloroplastic |
| Scaffold_2866 | 22116 | A | G | 43 | 1391.77 | noncoding | Transition | 1/1 | 50S ribosomal protein L36, chloroplastic |
| Scaffold_2866 | 22120 | T | C | 45 | 1288.77 | noncoding | Transition | 1/1 | 50S ribosomal protein L36, chloroplastic |