| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_27 | 818034 | C | T | 19 | 277.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 818085 | A | G | 12 | 194.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 818151 | A | G | 19 | 43.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 819894 | G | A | 21 | 34.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 820035 | A | G | 42 | 384.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 820044 | T | C | 40 | 715.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_27 | 820092 | T | C | 20 | 158.77 | CDS | Transition | 0/1 | FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) |
| Scaffold_914 | 20876 | A | G | 10 | 335.77 | exon | Transition | 1/1 | Fasciclin-like arabinogalactan protein 2 |
| Scaffold_2580 | 19183 | T | C | 10 | 30.77 | exon | Transition | 0/1 | F-box protein At5g39450 |
| Scaffold_43 | 193533 | A | G | 106 | 401.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 193674 | T | C | 22 | 245.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198741 | G | A | 34 | 488.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198759 | C | T | 43 | 460.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_43 | 198779 | G | A | 64 | 637.77 | exon | Transition | 0/1 | F-box protein MAX2 (F-box/LRR-repeat protein 7) (Protein KARRIKIN INSENSITIVE 1) (Protein MORE AXILLARY BRANCHING 2) (Protein ORESARA 9) |
| Scaffold_3601 | 16190 | A | G | 19 | 555.77 | exon | Transition | 1/1 | F-box/WD-40 repeat-containing protein At5g21040 |
| Scaffold_3708 | 20271 | C | T | 61 | 1954.77 | CDS | Transition | 1/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_3708 | 21782 | C | T | 27 | 604.77 | intron | Transition | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) |
| Scaffold_155 | 380581 | A | G | 33 | 85.77 | exon | Transition | 0/1 | Ferredoxin-dependent glutamate synthase, chloroplastic (EC 1.4.7.1) (Fd-GOGAT) (SoFdGOGAT) |
| Scaffold_65 | 1323740 | T | C | 27 | 630.77 | CDS | Transition | 1/1 | Ferrochelatase-1, chloroplastic/mitochondrial (AtFC1) (EC 4.99.1.1) (Ferrochelatase-I) (AtFC-I) (Heme synthase 1) (Protoheme ferro-lyase 1) |
| Scaffold_65 | 1323775 | T | C | 20 | 567.77 | intron | Transition | 1/1 | Ferrochelatase-1, chloroplastic/mitochondrial (AtFC1) (EC 4.99.1.1) (Ferrochelatase-I) (AtFC-I) (Heme synthase 1) (Protoheme ferro-lyase 1) |