| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_102 | 37869 | T | C | 11 | 49.77 | exon | Transition | 0/1 | Formate--tetrahydrofolate ligase (EC 6.3.4.3) (10-formyletrahydrofolate synthetase) (FHS) (FTHFS) (Formyltetrahydrofolate synthetase) |
| Scaffold_35 | 606115 | C | T | 15 | 320.18 | exon | Transition | 0/1 | Gallate 1-beta-glucosyltransferase (EC 2.4.1.136) (UDP-glucose:gallate glucosyltransferase) (Vanillate 1-beta-glucosyltransferase) |
| Scaffold_35 | 606238 | A | G | 26 | 598.77 | exon | Transition | 0/1 | Gallate 1-beta-glucosyltransferase (EC 2.4.1.136) (UDP-glucose:gallate glucosyltransferase) (Vanillate 1-beta-glucosyltransferase) |
| Scaffold_35 | 606313 | G | A | 22 | 485.53 | exon | Transition | 0/1 | Gallate 1-beta-glucosyltransferase (EC 2.4.1.136) (UDP-glucose:gallate glucosyltransferase) (Vanillate 1-beta-glucosyltransferase) |
| Scaffold_81 | 9628 | A | G | 33 | 143.77 | CDS | Transition | 0/1 | GDSL esterase/lipase At4g28780 (EC 3.1.1.-) (Extracellular lipase At4g28780) |
| Scaffold_81 | 11432 | T | C | 49 | 33.77 | CDS | Transition | 0/1 | GDSL esterase/lipase At4g28780 (EC 3.1.1.-) (Extracellular lipase At4g28780) |
| Scaffold_156 | 200139 | G | A | 14 | 189.77 | intron | Transition | 0/1 | General transcription and DNA repair factor IIH helicase subunit XPB1 (TFIIH subunit XPB) (EC 3.6.4.12) (ERCC3 homolog 1) (Protein araXPB) (RAD25 homolog 1) (AtXPB1) (XPB homolog 1) |
| Scaffold_2944 | 30289 | C | T | 11 | 87.77 | exon | Transition | 0/1 | Glucan endo-1,3-beta-glucosidase 9 (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 9) ((1->3)-beta-glucanase 9) (Beta-1,3-endoglucanase 9) (Beta-1,3-glucanase 9) |
| Scaffold_57 | 1525113 | C | T | 14 | 55.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525171 | T | C | 34 | 79.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525284 | C | T | 27 | 408.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525336 | G | A | 33 | 185.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525510 | C | T | 77 | 533.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525564 | G | A | 14 | 289.77 | exon | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1525923 | C | T | 31 | 490.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527218 | A | G | 49 | 715.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527239 | A | G | 57 | 550.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1527256 | A | G | 58 | 567.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_57 | 1528324 | A | G | 71 | 1055.77 | CDS | Transition | 0/1 | Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial (Glu-AdT subunit B) (EC 6.3.5.-) |
| Scaffold_98 | 102808 | T | C | 14 | 355.78 | CDS | Transition | 1/1 | Glutathione S-transferase TCHQD (EC 2.5.1.18) (Protein tetrachlorohydroquinone dehalogenase-homolog) |