| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_144 | 447290 | T | C | 33 | 792.77 | CDS | Transition | 1/1 | Glycosyltransferase family protein 64 protein C5 (GT64 C5) (EC 2.4.1.-) |
| Scaffold_2737 | 1796 | T | C | 23 | 40.77 | CDS | Transition | 0/1 | GPN-loop GTPase QQT2 (EC 3.6.5.-) (Protein QUATRE QUART 2) |
| Scaffold_2737 | 1817 | C | T | 34 | 151.77 | CDS | Transition | 0/1 | GPN-loop GTPase QQT2 (EC 3.6.5.-) (Protein QUATRE QUART 2) |
| Scaffold_2737 | 1904 | C | T | 49 | 656.77 | CDS | Transition | 0/1 | GPN-loop GTPase QQT2 (EC 3.6.5.-) (Protein QUATRE QUART 2) |
| Scaffold_2737 | 2102 | C | T | 41 | 389.77 | CDS | Transition | 0/1 | GPN-loop GTPase QQT2 (EC 3.6.5.-) (Protein QUATRE QUART 2) |
| Scaffold_2737 | 2111 | G | A | 38 | 388.77 | CDS | Transition | 0/1 | GPN-loop GTPase QQT2 (EC 3.6.5.-) (Protein QUATRE QUART 2) |
| Scaffold_48 | 681453 | G | A | 17 | 61.77 | CDS | Transition | 0/1 | G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (EC 2.7.11.1) |
| Scaffold_27 | 1692626 | G | A | 20 | 43.77 | CDS | Transition | 0/1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135) |
| Scaffold_27 | 1692791 | A | G | 39 | 1087.77 | CDS | Transition | 1/1 | G-type lectin S-receptor-like serine/threonine-protein kinase LECRK3 (OsLecRK3) (EC 2.7.11.1) (OsRLCK135) |
| Scaffold_33 | 897955 | C | T | 13 | 32.77 | exon | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 53962 | G | A | 71 | 309.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54028 | C | T | 98 | 1962.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54057 | G | A | 52 | 75.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54066 | A | G | 35 | 33.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54818 | A | G | 29 | 1000.77 | CDS | Transition | 1/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54825 | T | C | 40 | 1467.77 | CDS | Transition | 1/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54884 | C | T | 144 | 377.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54959 | T | A,G | 108 | 1597.77 | intron | Transition | 1/2 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 54973 | A | G | 48 | 1162.77 | intron | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |
| Scaffold_3039 | 55501 | C | T | 81 | 1958.77 | CDS | Transition | 0/1 | Heat shock 70 kDa protein 17 (Heat shock protein 70-17) (AtHsp70-17) |