| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_27 | 319411 | C | T | 24 | 305.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319447 | T | C | 32 | 31.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319583 | G | A | 13 | 172.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319585 | T | C | 13 | 152.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319594 | C | T | 15 | 120.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_27 | 319918 | G | A | 21 | 172.77 | exon | Transition | 0/1 | Lysine-specific demethylase REF6 (EC 1.14.11.-) (Jumonji domain-containing protein 12) (Lysine-specific histone demethylase REF6) (Protein RELATIVE OF EARLY FLOWERING 6) |
| Scaffold_36 | 21321 | T | C | 17 | 43.77 | CDS | Transition | 0/1 | MACPF domain-containing protein CAD1 (Protein CONSTITUTIVELY ACTIVATED CELL DEATH 1) (Protein CAD1) |
| Scaffold_72 | 442308 | G | A | 27 | 324.77 | intron | Transition | 0/1 | Malate dehydrogenase, cytoplasmic (EC 1.1.1.37) |
| Scaffold_2 | 1105319 | C | T | 22 | 587.94 | CDS | Transition | 1/1 | MDIS1-interacting receptor like kinase 2 (AtMIK2) (Probable LRR receptor-like serine/threonine-protein kinase At4g08850) (EC 2.7.11.1) |
| Scaffold_3243 | 72828 | T | C | 18 | 200.77 | exon | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |
| Scaffold_3243 | 73089 | A | G | 30 | 104.77 | exon | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |
| Scaffold_3243 | 73332 | C | T | 22 | 89.77 | exon | Transition | 0/1 | Mediator of RNA polymerase II transcription subunit 13 (Protein GRAND CENTRAL) (Protein MACCHI-BOU 2) |
| Scaffold_400 | 9433 | G | A | 15 | 492.77 | intron | Transition | 1/1 | Metacaspase-5 (AtMC5) (EC 3.4.22.-) (Metacaspase 2b) (AtMCP2b) (Metacaspase-6) |
| Scaffold_501 | 53628 | C | T | 25 | 714.77 | intron | Transition | 1/1 | Metallothionein-like protein type 2 |
| Scaffold_501 | 53629 | A | G | 33 | 912.77 | intron | Transition | 1/1 | Metallothionein-like protein type 2 |
| Scaffold_1148 | 37489 | T | C | 67 | 68.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1148 | 37560 | A | G | 66 | 589.77 | CDS | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1871 | 18351 | T | C | 10 | 107.77 | noncoding | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_1871 | 18353 | A | G | 10 | 106.77 | noncoding | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |
| Scaffold_3440 | 38130 | C | T | 12 | 132.77 | intron | Transition | 0/1 | Mitochondrial adenine nucleotide transporter ADNT1 (Adenine nucleotide transporter 1) |