| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_168 | 7102 | T | C | 10 | 255.77 | CDS | Transition | 0/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 7168 | T | C | 14 | 235.77 | CDS | Transition | 0/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 7853 | C | T | 25 | 841.77 | CDS | Transition | 1/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 8146 | C | T | 66 | 2216.77 | CDS | Transition | 1/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 8167 | G | A | 63 | 2113.77 | CDS | Transition | 1/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 8209 | C | T | 95 | 2816.77 | CDS | Transition | 1/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_168 | 8543 | C | T | 35 | 1138.79 | CDS | Transition | 1/1 | Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5 (EC 3.6.4.13) (DEAH RNA helicase homolog PRP22) |
| Scaffold_146 | 182318 | G | A | 49 | 1308.77 | exon | Transition | 1/1 | Probable protein phosphatase 2C 13 (AtPP2C13) (EC 3.1.3.16) |
| Scaffold_4 | 1237394 | T | C | 15 | 432.77 | exon | Transition | 1/1 | Probable protein phosphatase 2C 35 (AtPP2C35) (EC 3.1.3.16) |
| Scaffold_43 | 1235861 | C | T | 57 | 1564.77 | CDS | Transition | 1/1 | Probable serine/threonine-protein kinase PBL11 (EC 2.7.11.1) (PBS1-like protein 11) |
| Scaffold_53 | 199145 | A | G | 46 | 64.77 | CDS | Transition | 0/1 | Probable serine/threonine-protein kinase PBL5 (EC 2.7.11.1) (PBS1-like protein 5) (Serine/threonine-protein kinase RLCKVII) |
| Scaffold_2567 | 43488 | T | C | 24 | 151.77 | intron | Transition | 0/1 | Probable serine/threonine-protein kinase PBL9 (EC 2.7.11.1) (PBS1-like protein 9) (Protein kinase 1A) |
| Scaffold_2567 | 43489 | G | A | 22 | 37.77 | intron | Transition | 0/1 | Probable serine/threonine-protein kinase PBL9 (EC 2.7.11.1) (PBS1-like protein 9) (Protein kinase 1A) |
| Scaffold_338 | 51798 | A | G | 11 | 390.77 | exon | Transition | 1/1 | Probable zinc metalloprotease EGY2, chloroplastic (EC 3.4.24.-) (Protein ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN 2) |
| Scaffold_2 | 1099364 | G | A | 19 | 477.96 | exon | Transition | 1/1 | Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 |
| Scaffold_45 | 127509 | G | A | 14 | 323.78 | CDS | Transition | 1/1 | Proteasome activator subunit 4 (Proteasome activator PA200) |
| Scaffold_1430 | 27989 | C | T | 44 | 1285.77 | exon | Transition | 1/1 | Proteasome subunit alpha type-4-A (EC 3.4.25.1) (20S proteasome alpha subunit C-1) (Proteasome 27 kDa subunit) (Proteasome component 9) (Proteasome subunit alpha type-3) |
| Scaffold_3426 | 44630 | T | C | 20 | 51.77 | exon | Transition | 0/1 | Protein CROWDED NUCLEI 1 (Protein KAKU2) (Protein LITTLE NUCLEI 1) |
| Scaffold_703 | 18411 | A | G | 33 | 905.77 | noncoding | Transition | 1/1 | Protein DA1-related 5 |
| Scaffold_23 | 1510315 | G | A | 15 | 354.22 | CDS | Transition | 0/1 | Protein EMBRYO SAC DEVELOPMENT ARREST 30 (EC 2.4.1.-) (O-fucosyltransferase 22) (O-FucT-22) (O-fucosyltransferase family protein) (Protein TUBE GROWTH DEFECTIVE 1) |