| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_35 | 260922 | A | G | 12 | 424.77 | exon | Transition | 1/1 | Protein GIGANTEA |
| Scaffold_252 | 70485 | A | G | 37 | 54.77 | CDS | Transition | 0/1 | Protein GIGANTEA |
| Scaffold_5 | 1159909 | T | C | 73 | 2084.77 | CDS | Transition | 1/1 | Protein INVOLVED IN DE NOVO 2 (Protein RNA-DIRECTED DNA METHYLATION 12) |
| Scaffold_998 | 25546 | T | C | 24 | 45.77 | CDS | Transition | 0/1 | Protein MEI2-like 2 (OML2) (MEI2-like protein 2) |
| Scaffold_1014 | 16833 | G | A | 12 | 276.18 | intron | Transition | 0/1 | Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT1-h6) (Protein DEFECTIVE IN MERISTEM SILENCING 11) |
| Scaffold_1014 | 16929 | T | C | 10 | 38.77 | CDS | Transition | 0/1 | Protein MICRORCHIDIA 6 (AtMORC6) (EC 3.6.-.-) (Protein CRT1-homolog 6) (CRT1-h6) (Protein DEFECTIVE IN MERISTEM SILENCING 11) |
| Scaffold_68 | 687163 | C | T | 13 | 419.77 | exon | Transition | 1/1 | Protein NETWORKED 1D |
| Scaffold_1274 | 8363 | C | T | 19 | 435.77 | exon | Transition | 0/1 | Protein phosphatase 1 regulatory subunit INH3 (Protein INHIBITOR-3) (AtINH3) |
| Scaffold_149 | 234774 | T | C | 250 | 8071.77 | exon | Transition | 1/1 | Protein RALF-like 33 |
| Scaffold_107 | 133086 | G | A | 20 | 560.77 | intron | Transition | 1/1 | Protein SPIRRIG (BEACH domain-containing protein A1) (BEACH-domain homolog A1) |
| Scaffold_36 | 1640628 | A | G | 11 | 35.77 | CDS | Transition | 0/1 | Protein SRG1 (AtSRG1) (Protein SENESCENCE-RELATED GENE 1) |
| Scaffold_17 | 142411 | T | C | 64 | 498.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142559 | T | C | 66 | 62.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142586 | G | C,T | 86 | 2544.77 | exon | Transition | 1/2 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142592 | C | T | 81 | 776.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 142676 | T | C | 57 | 43.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 147366 | G | A | 10 | 178.77 | CDS | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_17 | 147372 | A | G | 10 | 85.77 | CDS | Transition | 0/1 | Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 (AtSKD1) (EC 3.6.4.6) (Protein VACUOLAR PROTEIN SORTING 4) |
| Scaffold_83 | 27751 | T | C | 33 | 60.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF MAX2 1 (AtSMXL1) |
| Scaffold_83 | 27752 | A | G | 13 | 46.77 | exon | Transition | 0/1 | Protein SUPPRESSOR OF MAX2 1 (AtSMXL1) |