| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_3740 | 41675 | C | T | 24 | 303.77 | noncoding | Transition | 0/1 | Uncharacterized protein At1g01500 |
| Scaffold_3061 | 33803 | T | C | 250 | 177.77 | noncoding | Transition | 0/1 | Uncharacterized protein ORF91 |
| Scaffold_3061 | 33812 | T | C | 250 | 541.77 | noncoding | Transition | 0/1 | Uncharacterized protein ORF91 |
| Scaffold_3061 | 33904 | C | T | 42 | 1393.77 | noncoding | Transition | 1/1 | Uncharacterized protein ORF91 |
| Scaffold_3061 | 33906 | G | A | 36 | 1393.77 | noncoding | Transition | 1/1 | Uncharacterized protein ORF91 |
| Scaffold_3660 | 37702 | T | C | 44 | 604.77 | noncoding | Transition | 1/1 | Uncharacterized protein ORF91 |
| Scaffold_3587 | 31273 | C | T | 17 | 213.77 | intron | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31289 | C | T | 14 | 69.77 | intron | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31598 | C | T | 11 | 199.77 | intron | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31658 | C | T | 15 | 209.77 | intron | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31666 | C | T | 14 | 256.77 | intron | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31771 | C | T | 20 | 372.77 | CDS | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31777 | C | T | 18 | 208.77 | CDS | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31844 | C | T | 18 | 372.77 | CDS | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_3587 | 31874 | C | T | 38 | 647.77 | noncoding | Transition | 0/1 | Uncharacterized tatC-like protein ymf16 (ORFX) |
| Scaffold_497 | 25521 | T | C | 22 | 607.77 | CDS | Transition | 1/1 | Vacuolar protein sorting-associated protein 29 (Protein MAIGO 1) (Vesicle protein sorting 29) |
| Scaffold_159 | 476824 | A | G | 18 | 556.77 | CDS | Transition | 1/1 | Vacuolar protein sorting-associated protein 41 homolog |
| Scaffold_30 | 1522880 | G | A | 62 | 1682.77 | CDS | Transition | 1/1 | Wall-associated receptor kinase-like 20 (EC 2.7.11.-) |
| Scaffold_31 | 38032 | T | C | 10 | 295.78 | CDS | Transition | 1/1 | WD repeat-containing protein PCN (Protein POPCORN) |
| Scaffold_87 | 21914 | A | G | 25 | 657.77 | CDS | Transition | 1/1 | Zinc finger CCCH domain-containing protein 24 (AtC3H24) (EC 2.1.1.-) |