| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 2189730 | G | T | 12 | 39.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2343436 | G | C | 10 | 232.84 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 2352090 | A | T | 24 | 719.77 | exon | Transversion | 1/1 | Receptor-like protein kinase 2 (EC 2.7.11.1) |
| Scaffold_12 | 2609401 | T | G | 22 | 31.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628563 | C | A | 110 | 949.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628605 | A | C | 104 | 874.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628635 | A | T | 113 | 1130.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628936 | T | A | 10 | 110.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2628981 | A | T | 173 | 3123.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2629077 | C | A | 201 | 1222.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2632623 | T | A | 238 | 1926.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633146 | C | G | 250 | 3944.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633247 | T | G | 127 | 560.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633302 | T | A | 109 | 828.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2633326 | A | C | 134 | 2239.77 | CDS | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 2870984 | C | G | 22 | 623.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 3292097 | A | T | 26 | 50.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3292562 | C | G | 92 | 2618.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3292563 | T | G | 90 | 106.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_12 | 3652968 | A | T | 13 | 349.78 | CDS | Transversion | 1/1 | Unannotated |