| SNP Id | Position | Reference Allele | Alternate Allele | DP | Quality | Located At | Type | Genotype | Function |
| Scaffold_12 | 3712694 | A | T | 85 | 2893.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 3779966 | A | T | 19 | 282.77 | CDS | Transversion | 0/1 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3780231 | T | G | 14 | 334.77 | CDS | Transversion | 0/1 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3781706 | T | G | 11 | 200.78 | CDS | Transversion | 0/1 | Rop guanine nucleotide exchange factor 1 (AtRopGEF1) (Kinase partner protein-like) (KPP-like) (Rho of plants guanine nucleotide exchange factor 1) |
| Scaffold_12 | 3867269 | G | C | 25 | 816.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 3882895 | A | T | 12 | 288.78 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 3995465 | T | A | 12 | 344.78 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 4193483 | C | A | 12 | 412.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 4193490 | G | T | 15 | 539.77 | intron | Transversion | 1/1 | Unannotated |
| Scaffold_12 | 4225954 | A | T | 43 | 1386.77 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 55933 | T | A | 12 | 58.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 84455 | G | C | 15 | 429.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 262629 | C | G | 10 | 169.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 301922 | A | C | 182 | 6282.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 301958 | A | C | 249 | 36.77 | exon | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 389053 | C | A | 10 | 259.8 | CDS | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 424077 | G | C | 12 | 418.77 | noncoding | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 898183 | T | G | 15 | 248.77 | intron | Transversion | 0/1 | Unannotated |
| Scaffold_13 | 1336883 | G | T | 249 | 7669.77 | exon | Transversion | 1/1 | Unannotated |
| Scaffold_13 | 1337189 | T | G | 17 | 523.77 | exon | Transversion | 1/1 | Unannotated |